We can see this clearly if we replace the third sentence with another, so that the sequence reads:
The output of the assembler contains only the sequence reads that assemble with high confidence into a contig.
As a result, it takes a week to run the machine, and the average sequence read to come out is only about 32 bases long.
Therefore, any sequence reads that are taken from the large template can be mapped onto the genome with a high degree of confidence.
Multiple sequence reads from the same large template molecule.
Rather, it uses computer algorithms to assemble short sequence reads to cover the entire genome.
The sequence read archive includes this quality score.
At the time, there was community consensus that the optimal fragment length for pairwise end sequencing would be three times the sequence read length.
Each sequence is called an end-read or read and two reads from the same clone are referred to as mate pairs.
The ending sequence would have read "killed in action" had the story ended there.