It is a special purpose system built for molecular dynamics simulations, especially protein structure prediction.

The 3-site models are very popular for molecular dynamics simulations because of their simplicity and computational efficiency.

It is frequently used to calculate Trajectory of particles in molecular dynamics simulations and video games.

Typical time steps for molecular dynamics simulations are on the order of 1 fs.

Different methods have been used such as first principles, atomistic potential calculations and molecular dynamics simulations.

Design of a molecular dynamics simulation should account for the available computational power.

This may create instabilities that require special treatment in molecular dynamics simulations.

You could also easily do a molecular dynamics simulation, but for the most accurate results you're going to need to worry about your potentials.

The group is now doing molecular dynamics simulations on carbene cycloadditions.

MDGrape-3 is designed for pharmaceutical research, specifically molecular dynamics simulation.