A Serbian court had indicted Çeku for war crimes he committed in Kosovo.
The court indicted the CBI and ordered that Sinha be removed from the case.
So far, the court has indicted 52 people - 45 Serbs and 7 Croats - on charges of genocide and crimes against humanity.
The court has indicted 53 Serbs, 18 Croats and 3 Muslims.
The court did not indict his wartime counterparts.
The court had also indicted a Serbian journalist on charges of disclosing the name of a protected witness.
The court has indicted him in the killings of Bosnian Croats in a southern village in 1993, his lawyer said.
In a nation still largely run by the military, Honduran courts have indicted powerful active-duty officers.
In April 2012 a Lebanese military court indicted 29 suspects, including a Syrian national, in connection with the abduction.
The court has indicted 77 people, mostly Serbs accused of participating in the massacres of Muslims.